A. Afek, J. L. Schipper, J. Horton, R. Gordan, and D. B. Lukatsky, Protein-DNA Binding in the Absence of Specific Base-pair Recognition, Proc. Natl. Acad. Sci. USA (Early Edition, Open access) (2014) A. Afek and D. B. Lukatsky, Positive and Negative Design for Nonconsensus Protein-DNA Binding Affinity in the Vicinity of Functional Binding Sites, Biophys. J. 105(7), 1653-1660 (2013). PDF A. Afek and D. B. Lukatsky, Genome-Wide Organization of Eukaryotic Pre-initiation Complex is Influenced by Nonconsensus Protein-DNA Binding, Biophys. J. 104(5), 1107-1115 (2013). PDF Reviewed in New and Notable A. Afek and D. B. Lukatsky, Nonspecific Protein-DNA Binding is Widespread in the Yeast Genome, Biophys. J. 102(8), 1881-1888 (2012). PDF M. Elkin, I. Andre, and D. B. Lukatsky, Energy Fluctuations Shape Free Energy of Nonspecific Biomolecular Interactions, J. Stat. Phys. 146, 870-877 (2012). PDF A. Afek, I. Sela, N. Musa-Lempel, and D. B. Lukatsky, Nonspecific Transcription Factor-DNA Binding Influences Nucleosome Occupancy in Yeast, Biophys. J. 101(10), 2465-2475 (2011). PDF D. B. Lukatsky A. Afek, and E. I. Shakhnovich, Sequence Correlations Shape Protein Promiscuity, J. Chem. Phys. 135, 065104 (2011). PDF I. Sela and D. B. Lukatsky, DNA Sequence Correlations Shape Nonspecific Transcription Factor-DNA Binding Affinity, Biophys. J. 101, 160-166 (2011). PDF A. Afek, E. I. Shakhnovich, and D. B. Lukatsky, Multi-Scale Sequence Correlations Increase Proteome Structural Disorder and Promiscuity, J. Mol. Biol. 409, 439-449 (2011). PDF D. B. Lukatsky and E. I. Shakhnovich, Statistically Enhanced Promiscuity of Structurally Correlated Patterns, Phys. Rev. E 77, 020901(R) (2008). PDF D. B. Lukatsky, B. E. Shakhnovich, J. Mintseris, and E. I. Shakhnovich, Structural Similarity Enhances Interaction Propensity of Proteins, J. Mol. Biol. 365, 1596 (2007). PDF D. B. Lukatsky, K. B. Zeldovich, and E. I. Shakhnovich, Statistically Enhanced Self-Attraction of Random Patterns, Phys. Rev. Lett. 97, 178101 (2006). PDF D. B. Lukatsky, B. Mulder, and D. Frenkel, Designing Ordered DNA-linked Nanoparticle Assemblies, J. Phys. Cond. Mat. 18, S567 (2006). D. B. Lukatsky and D. Frenkel, Surface and Bulk Dissolution Properties and Selectivity of DNA-linked Nanoparticle Assemblies, J. Chem. Phys. 122, 214904 (2005). D. B. Lukatsky and D. Frenkel, Phase Behavior and Selectivity of DNA-Linked Nanoparticle Assemblies, Phys. Rev. Lett. 92, 068302 (2004). Reviewed in Nature Materials Nanozone, The Physics of DNA detection, Feb. 19, (2004). D. B. Lukatsky and D. Frenkel, Multiple Stalk Formation as a Pathway of Defect-Induced Membrane Fusion, Eur. Phys. J. E 14, 3 (2004). D. B. Lukatsky, G. Haran, and S. A. Safran, Slow Fluctuations in Enhanced Raman Scattering and Surface Roughness Relaxation, Phys. Rev E 67, 062402 (2003). D. B. Lukatsky and S. A. Safran, Universal Reduction of Pressure Between Charged Surfaces by Long-Wavelength Surface Charge Modulation, Europhys. Lett. 60, 629 (2002). D. B. Lukatsky, S. A. Safran, A.W.C. Lau, and P. Pincus, Enhanced Counterion Localization Induced by Surface Charge Modulation, Europhys. Lett. 58, 785 (2002). A.W.C. Lau, D. B. Lukatsky, P. Pincus, and S. A. Safran, Charge Fluctuations and Counterion Condensation, Phys. Rev. E 65, 051502 (2002). D. B. Lukatsky and S. A. Safran, Fluctuations and Ordering in Macroion Suspensions, Phys. Rev. E 63, 011405 (2001). D. B. Lukatsky and S. A. Safran, Pressure of Correlated Layer-Charge and Counterion Fluctuations in Charged Thin Films, Phys. Rev. E 60, 5848 (1999). D. B. Lukatsky and V. N. Bondarev, Model for the Order-Disorder Transition in Charged Colloidal Suspension, Physica A 249, 369 (1998). D. B. Lukatsky and E. Rysiakiewicz-Pasek, Modelling of Inhomogeneity in Solid Coatings Obtained from Water Suspension, in Computer Modelling of Electronic and atomic Processes in Solids, R.C. Tennyson and A.E. Kiv eds., (NATO ASI Series), 69 (1997).

A. Afek, J. L. Schipper, J. Horton, R. Gordan, and D. B. Lukatsky, Protein-DNA Binding in the Absence of Specific Base-pair Recognition, Proc. Natl. Acad. Sci. USA (Early Edition, Open access) (2014)

A. Afek and D. B. Lukatsky, Positive and Negative Design for Nonconsensus Protein-DNA Binding Affinity in the Vicinity of Functional Binding Sites, Biophys. J. 105(7), 1653-1660 (2013). PDF

A. Afek and D. B. Lukatsky, Genome-Wide Organization of Eukaryotic Pre-initiation Complex is Influenced by Nonconsensus Protein-DNA Binding, Biophys. J. 104(5), 1107-1115 (2013). PDF Reviewed in New and Notable

A. Afek and D. B. Lukatsky, Nonspecific Protein-DNA Binding is Widespread in the Yeast Genome, Biophys. J. 102(8), 1881-1888 (2012). PDF

M. Elkin, I. Andre, and D. B. Lukatsky, Energy Fluctuations Shape Free Energy of Nonspecific Biomolecular Interactions, J. Stat. Phys. 146, 870-877 (2012). PDF

A. Afek, I. Sela, N. Musa-Lempel, and D. B. Lukatsky, Nonspecific Transcription Factor-DNA Binding Influences Nucleosome Occupancy in Yeast, Biophys. J. 101(10), 2465-2475 (2011). PDF

D. B. Lukatsky A. Afek, and E. I. Shakhnovich, Sequence Correlations Shape Protein Promiscuity, J. Chem. Phys. 135, 065104 (2011). PDF

I. Sela and D. B. Lukatsky, DNA Sequence Correlations Shape Nonspecific Transcription Factor-DNA Binding Affinity, Biophys. J. 101, 160-166 (2011). PDF

A. Afek, E. I. Shakhnovich, and D. B. Lukatsky, Multi-Scale Sequence Correlations Increase Proteome Structural Disorder and Promiscuity, J. Mol. Biol. 409, 439-449 (2011). PDF

D. B. Lukatsky and E. I. Shakhnovich, Statistically Enhanced Promiscuity of Structurally Correlated Patterns, Phys. Rev. E 77, 020901(R) (2008). PDF

D. B. Lukatsky, B. E. Shakhnovich, J. Mintseris, and E. I. Shakhnovich, Structural Similarity Enhances Interaction Propensity of Proteins, J. Mol. Biol. 365, 1596 (2007). PDF

D. B. Lukatsky, K. B. Zeldovich, and E. I. Shakhnovich, Statistically Enhanced Self-Attraction of Random Patterns, Phys. Rev. Lett. 97, 178101 (2006). PDF

D. B. Lukatsky, B. Mulder, and D. Frenkel, Designing Ordered DNA-linked Nanoparticle Assemblies, J. Phys. Cond. Mat. 18, S567 (2006).

D. B. Lukatsky and D. Frenkel, Surface and Bulk Dissolution Properties and Selectivity of DNA-linked Nanoparticle Assemblies, J. Chem. Phys. 122, 214904 (2005).

D. B. Lukatsky and D. Frenkel, Phase Behavior and Selectivity of DNA-Linked Nanoparticle Assemblies, Phys. Rev. Lett. 92, 068302 (2004). Reviewed in Nature Materials Nanozone, The Physics of DNA detection, Feb. 19, (2004).

D. B. Lukatsky and D. Frenkel, Multiple Stalk Formation as a Pathway of Defect-Induced Membrane Fusion, Eur. Phys. J. E 14, 3 (2004).

D. B. Lukatsky, G. Haran, and S. A. Safran, Slow Fluctuations in Enhanced Raman Scattering and Surface Roughness Relaxation, Phys. Rev E 67, 062402 (2003).

D. B. Lukatsky and S. A. Safran, Universal Reduction of Pressure Between Charged Surfaces by Long-Wavelength Surface Charge Modulation, Europhys. Lett. 60, 629 (2002).

D. B. Lukatsky, S. A. Safran, A.W.C. Lau, and P. Pincus, Enhanced Counterion Localization Induced by Surface Charge Modulation, Europhys. Lett. 58, 785 (2002).

A.W.C. Lau, D. B. Lukatsky, P. Pincus, and S. A. Safran, Charge Fluctuations and Counterion Condensation, Phys. Rev. E 65, 051502 (2002).

D. B. Lukatsky and S. A. Safran, Fluctuations and Ordering in Macroion Suspensions, Phys. Rev. E 63, 011405 (2001).

D. B. Lukatsky and S. A. Safran, Pressure of Correlated Layer-Charge and Counterion Fluctuations in Charged Thin Films, Phys. Rev. E 60, 5848 (1999).

D. B. Lukatsky and V. N. Bondarev, Model for the Order-Disorder Transition in Charged Colloidal Suspension, Physica A 249, 369 (1998).

D. B. Lukatsky and E. Rysiakiewicz-Pasek, Modelling of Inhomogeneity in Solid Coatings Obtained from Water Suspension, in Computer Modelling of Electronic and atomic Processes in Solids, R.C. Tennyson and A.E. Kiv eds., (NATO ASI Series), 69 (1997).